STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhhc-7Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (302 aa)    
Predicted Functional Partners:
Y18H1A.14
Glycosyltransferase family 92 protein; Belongs to the glycosyltransferase 92 family.
      
 0.907
Y92H12A.5
DUF2428 domain-containing protein.
      
 0.907
ubxn-1
UBX domain-containing protein 1; Ubiquitin-binding protein which acts as an adapter for ATPase cdc-48.1 and/or cdc-48.2, conferring substrate specificity. Together with ubxn-2 and ubxn-3, plays a role in hermaphrodite spermatogenesis probably by promoting the degradation of sex determination terminal factor tra-1.
   
  
 0.705
npp-8
Nuclear Pore complex Protein.
   
  
 0.700
dhhc-11
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.542
dhhc-13
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
0.450
dab-1
PID domain-containing protein.
   
   0.449
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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