STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
egl-26LRAT domain-containing protein. (317 aa)    
Predicted Functional Partners:
vab-23
Uncharacterized protein.
      
 0.699
best-13
Bestrophin homolog 13; Forms chloride channels.
      
 0.668
B0034.1
Uncharacterized protein.
      
 0.660
egl-38
Paired domain-containing protein.
      
 0.660
cog-1
Homeobox domain-containing protein.
      
 0.613
ceh-2
Homeobox protein ceh-2; Required for activity of the M3 pharyngeal motor neuron. Belongs to the EMX homeobox family.
      
 0.582
pax-2
Paired domain-containing protein.
      
 0.581
cdh-3
Cadherin-3; Cell adhesion protein involved in the control of epithelial morphogenesis. Together with metalloproteinase zmp-1 and hemicentin him-4, plays a role in anchor cell (AC) invasion during postembryonic vulval development.
   
  
 0.554
eff-1
Epithelial Fusion Failure.
      
 0.549
his-49
Histone H3.
      
 0.461
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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