STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C29F5.1Uncharacterized protein. (383 aa)    
Predicted Functional Partners:
F58H1.2
Uncharacterized protein.
   
  
 0.898
F55H12.4
Uncharacterized protein.
   
  
 0.823
F13D12.6
Serine carboxypeptidase ctsa-1.2; Belongs to the peptidase S10 family.
   
  
 0.817
K08B12.1
Lipase_3 domain-containing protein.
   
  
 0.817
gnrr-1
G_PROTEIN_RECEP_F1_2 domain-containing protein.
      
 0.698
R04B3.2
Putative N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; Cleaves the GlcNAc-Asn bond which joins oligosaccharides to the peptide of asparagine-linked glycoproteins.
 
      0.603
Y54E5A.5
Uncharacterized protein.
    
   0.469
lgc-22
ShKT domain-containing protein.
   
   0.446
M142.8
Protein-lysine N-methyltransferase M142.8; S-adenosyl-L-methionine-dependent protein-lysine N- methyltransferase that methylates elongation factor 1-alpha. Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM5 family.
    
   0.445
eef-1A.2
Elongation factor 1-alpha.
   
   0.429
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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