STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pqn-21C2H2-type domain-containing protein. (806 aa)    
Predicted Functional Partners:
bed-1
BED-type domain-containing protein.
      
 0.807
nhr-104
NR LBD domain-containing protein.
      
 0.806
nhr-117
Nuclear Hormone Receptor family.
      
 0.759
spr-3
Suppressor of presenilin protein 3; Probable transcriptional regulator, which participates in the transcriptional repression of the presenilin protein hop-1.
   
  
 0.699
zip-8
bZIP transcription factor 8.
      
 0.699
icd-2
Nascent polypeptide-associated complex subunit alpha; May promote appropriate targeting of ribosome-nascent polypeptide complexes.
      
 0.698
hmg-1.2
High mobility group protein 1.2.
   
  
 0.694
nhr-14
Nuclear hormone receptor family member nhr-14; Orphan nuclear receptor.
      
 0.669
fkh-9
Fork-head domain-containing protein.
      
 0.666
zip-1
BZIP transcription factor family.
      
 0.660
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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