STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pmp-1Peroxisomal Membrane Protein related. (665 aa)    
Predicted Functional Partners:
pmp-2
Peroxisomal Membrane Protein related.
  
 
0.910
rad-51
DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA.
   
 
 0.862
Y25C1A.13
Uncharacterized protein.
   
  
 0.726
C39B5.14
Lipase_3 domain-containing protein.
   
  
 0.672
Y46H3A.5
Lipase_3 domain-containing protein.
   
  
 0.672
prx-19
Putative peroxisomal biogenesis factor 19; Belongs to the peroxin-19 family.
   
 
 0.669
K08C7.4
Uncharacterized protein.
      
 0.660
prx-5
TPR_REGION domain-containing protein.
   
  
 0.616
clec-204
C-type LECtin.
   
  
 0.588
drd-1
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
   
  
 0.564
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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