STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmeb-3SAND domain-containing protein. (376 aa)    
Predicted Functional Partners:
T20H4.2
C2H2-type domain-containing protein.
   
 
 0.847
shl-1
BTB domain-containing protein; Belongs to the potassium channel family.
      
 0.805
lst-5
Lateral Signaling Target.
   
  
 0.779
abts-3
HCO3_cotransp domain-containing protein.
      
 0.759
nhx-8
Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
   
  
 0.682
sul-2
Sulfatase domain-containing protein.
      
 0.667
ceh-48
One cut domain family member.
      
 0.663
C28C12.1
Uncharacterized protein.
   
    0.615
lin-2
Protein lin-2; May play a structural role in the induction of the vulva. May be required for the localization of signal transduction molecules (such as let-23 receptor) to either the basal membrane domain or the cell junctions.
    
   0.608
C29F5.3
RNase_Zc3h12a domain-containing protein.
   
    0.593
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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