nasp-2 protein (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

nasp-2

SHNi-TPR domain-containing protein. (582 aa)

Predicted Functional Partners:

C05C10.5

0.999

cpg-1

0.999

clec-87

0.999

mesp-1

0.999

F18A1.7

0.999

gln-5

0.999

pos-1

0.999

era-1

0.999

cyb-2.1

0.999

puf-3

0.999

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C05C10.5	F18A1.7	C05C10.5a.1	F18A1.7.1	Uncharacterized protein C05C10.5.	CPG4 domain-containing protein.	0.999
C05C10.5	clec-87	C05C10.5a.1	C25A1.8.1	Uncharacterized protein C05C10.5.	C-type lectin domain-containing protein 87.	0.999
C05C10.5	cpg-1	C05C10.5a.1	C07G2.1a.1	Uncharacterized protein C05C10.5.	Chondroitin proteoglycan 1; Required for polar body extrusion during cytokinesis in embryo development. Affects cortical granule size. Has roles in meiotic chromosome segregation, osmotic barrier function and polarization in conjunction with cpg-2. Binds chitin.	0.999
C05C10.5	cyb-2.1	C05C10.5a.1	Y43E12A.1.1	Uncharacterized protein C05C10.5.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.999
C05C10.5	era-1	C05C10.5a.1	W02F12.3.1	Uncharacterized protein C05C10.5.	Embryonic mRna (mRNA) Anterior.	0.999
C05C10.5	gln-5	C05C10.5a.1	F26D10.10.1	Uncharacterized protein C05C10.5.	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.	0.999
C05C10.5	mesp-1	C05C10.5a.1	C28C12.2.1	Uncharacterized protein C05C10.5.	MEiotic SPindle.	0.999
C05C10.5	nasp-2	C05C10.5a.1	C50B6.2.1	Uncharacterized protein C05C10.5.	SHNi-TPR domain-containing protein.	0.999
C05C10.5	pos-1	C05C10.5a.1	F52E1.1.1	Uncharacterized protein C05C10.5.	Cytoplasmic zinc-finger protein.	0.999
C05C10.5	puf-3	C05C10.5a.1	Y45F10A.2.1	Uncharacterized protein C05C10.5.	PUM-HD domain-containing protein.	0.999
F18A1.7	C05C10.5	F18A1.7.1	C05C10.5a.1	CPG4 domain-containing protein.	Uncharacterized protein C05C10.5.	0.999
F18A1.7	clec-87	F18A1.7.1	C25A1.8.1	CPG4 domain-containing protein.	C-type lectin domain-containing protein 87.	0.999
F18A1.7	cpg-1	F18A1.7.1	C07G2.1a.1	CPG4 domain-containing protein.	Chondroitin proteoglycan 1; Required for polar body extrusion during cytokinesis in embryo development. Affects cortical granule size. Has roles in meiotic chromosome segregation, osmotic barrier function and polarization in conjunction with cpg-2. Binds chitin.	0.999
F18A1.7	cyb-2.1	F18A1.7.1	Y43E12A.1.1	CPG4 domain-containing protein.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.999
F18A1.7	era-1	F18A1.7.1	W02F12.3.1	CPG4 domain-containing protein.	Embryonic mRna (mRNA) Anterior.	0.999
F18A1.7	gln-5	F18A1.7.1	F26D10.10.1	CPG4 domain-containing protein.	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.	0.999
F18A1.7	mesp-1	F18A1.7.1	C28C12.2.1	CPG4 domain-containing protein.	MEiotic SPindle.	0.999
F18A1.7	nasp-2	F18A1.7.1	C50B6.2.1	CPG4 domain-containing protein.	SHNi-TPR domain-containing protein.	0.999
F18A1.7	pos-1	F18A1.7.1	F52E1.1.1	CPG4 domain-containing protein.	Cytoplasmic zinc-finger protein.	0.999
F18A1.7	puf-3	F18A1.7.1	Y45F10A.2.1	CPG4 domain-containing protein.	PUM-HD domain-containing protein.	0.999