STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C50B6.7Alpha-amylase. (713 aa)    
Predicted Functional Partners:
pygl-1
Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 0.995
aagr-1
P-type domain-containing protein; Belongs to the glycosyl hydrolase 31 family.
  
 
 0.992
T04A8.7
Aamy domain-containing protein.
  
 
 0.986
agl-1
AGL (Amylo-1,6-GLucosidase, 4-alpha-glucanotransferase) glycogen debranching enzyme.
   
 0.957
tyr-4
TYRosinase.
   
  
 0.864
R05F9.6
Uncharacterized protein; Belongs to the phosphohexose mutase family.
  
 
 0.787
tre-3
Trehalase.
  
  
 0.783
tre-5
Trehalase.
  
  
 0.768
tre-1
Trehalase.
  
  
 0.766
tre-2
Trehalase.
  
  
 0.750
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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