STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bgnt-1.8B3GNT1, Beta-1,3-N-acetylGucosamiNylTransferase 1, homolog. (396 aa)    
Predicted Functional Partners:
R01E6.2
Uncharacterized protein.
   
    0.453
agmo-1
Alkylglycerol monooxygenase; Glyceryl-ether monooxygenase that cleaves the O-alkyl bond of ether lipids; Belongs to the sterol desaturase family. TMEM195 subfamily.
   
    0.433
C28H8.5
Uncharacterized protein C28H8.5.
   
    0.426
C35A5.5
Glycosyltransferase family 92 protein C35A5.5.
   
    0.407
C06C3.3
Doublecortin domain-containing protein.
   
    0.406
col-90
Putative cuticle collagen 90; Nematode cuticles are composed largely of collagen-like proteins. The cuticle functions both as an exoskeleton and as a barrier to protect the worm from its environment (By similarity).
   
    0.405
srz-12
Serpentine Receptor, class Z.
   
    0.400
R07B1.6
Uncharacterized protein R07B1.6.
   
    0.400
T05C1.3
Uncharacterized protein.
   
    0.400
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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