STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gst-42Probable maleylacetoacetate isomerase. (214 aa)    
Predicted Functional Partners:
hgo-1
Homogentisate 1,2-dioxygenase.
  
 
 0.988
fah-1
Fumarylacetoacetase.
  
 
 0.987
Y53G8B.1
Uncharacterized protein; Belongs to the GST superfamily.
  
 
 
0.907
gst-43
Glutathione S-Transferase; Belongs to the GST superfamily.
  
  
 
0.902
eef-1G
Probable elongation factor 1-gamma; Probably plays a role in anchoring the complex to other cellular components.
   
 
 0.843
rpb-3
RPOLD domain-containing protein.
   
 
 0.751
rpac-40
RPOLD domain-containing protein.
   
 
 0.751
kars-1
Lysine--tRNA ligase; Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 
 0.723
amt-1
Putative ammonium transporter 1; Involved in the uptake of ammonia; Belongs to the ammonia transporter channel (TC 1.A.11.2) family.
   
 
 0.703
F09B12.3
Putative phospholipase B-like 2; Putative phospholipase; Belongs to the phospholipase B-like family.
   
  
 0.690
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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