STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nhr-89Nuclear hormone receptor family member nhr-89; Orphan nuclear receptor; Belongs to the nuclear hormone receptor family. (310 aa)    
Predicted Functional Partners:
taf-7.1
TAFII55_N domain-containing protein.
      
 0.840
ets-5
ETS domain-containing transcription factor ets-5; Transcription factor that plays a role in the differentiation and function of the CO(2)- and O(2)-sensing BAG neurons. The BAG neurons are required for the behavioral avoidance of environmental CO(2) and the sensing of decreased O(2) levels. Promotes the expression of genes that play a role in CO(2)- and O(2)-sensing and in egg-laying in the BAG neurons. Positively regulates the transcription of the receptor-type guanylate cyclase gcy-9, which is a critical component of the CO(2) transduction pathway, in the BAG neurons. May mediate tra [...]
  
 
 
 0.832
F44E7.2
PhosphoGlycolate Phosphatase Homolog.
      
 0.809
C53A3.2
PhosphoGlycolate Phosphatase Homolog.
      
 0.806
fkh-6
Fork-head domain-containing protein.
    
 
 0.700
unc-120
MADS-box domain-containing protein.
    
 
 0.581
F19F10.1
ETS domain-containing protein.
  
 
   0.549
ets-7
ETS domain-containing protein.
  
 
   0.549
ets-8
ETS domain-containing protein.
  
 
   0.547
daf-14
MH2 domain-containing protein.
  
 
   0.547
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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