STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F11E6.3Uncharacterized protein. (345 aa)    
Predicted Functional Partners:
col-68
Col_cuticle_N domain-containing protein.
   
 
 0.927
Y22D7AL.16
C2H2-type domain-containing protein.
   
 
 0.868
fbxb-69
FBA_2 domain-containing protein.
      
 0.856
col-160
Col_cuticle_N domain-containing protein.
   
   0.848
col-46
COLlagen.
    
 
 0.821
col-42
Col_cuticle_N domain-containing protein.
   
   0.625
col-103
Col_cuticle_N domain-containing protein.
   
   0.615
col-80
Putative cuticle collagen 80; Nematode cuticles are composed largely of collagen-like proteins. The cuticle functions both as an exoskeleton and as a barrier to protect the worm from its environment (By similarity).
   
   0.590
col-98
Col_cuticle_N domain-containing protein.
   
   0.590
qua-1
Protein qua-1; Required for cuticle shedding and normal alae morphology and localization, and subsequently larval development.
    
 
 0.584
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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