STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col-20Col_cuticle_N domain-containing protein. (288 aa)    
Predicted Functional Partners:
col-178
Col_cuticle_N domain-containing protein.
  
   
0.999
col-119
Col_cuticle_N domain-containing protein.
  
   
0.999
col-140
Col_cuticle_N domain-containing protein.
  
    0.890
col-19
Cuticle collagen 19; Nematode cuticles are composed largely of collagen-like proteins. The cuticle functions both as an exoskeleton and as a barrier to protect the worm from its environment.
   
   
0.846
col-8
Cuticle collagen 8; Nematode cuticles are composed largely of collagen-like proteins. The cuticle functions both as an exoskeleton and as a barrier to protect the worm from its environment.
  
   0.825
col-122
Col_cuticle_N domain-containing protein.
  
   
0.781
col-106
Col_cuticle_N domain-containing protein.
  
  
0.671
col-129
Col_cuticle_N domain-containing protein.
  
   
0.642
col-143
Col_cuticle_N domain-containing protein.
  
   
0.634
col-124
Col_cuticle_N domain-containing protein.
  
   
0.617
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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