STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clec-42C-type LECtin. (555 aa)    
Predicted Functional Partners:
sru-12
Serpentine Receptor, class U.
      
 0.807
nhr-142
Nuclear Hormone Receptor family.
    
 
 0.805
nhr-102
Nuclear Hormone Receptor family.
    
 
 0.758
spp-7
SaPosin-like Protein family.
      
 0.662
nhr-178
Nuclear Hormone Receptor family.
      
 0.660
Y22D7AL.16
C2H2-type domain-containing protein.
   
 
 0.545
fbxb-69
FBA_2 domain-containing protein.
      
 0.513
F11E6.3
Uncharacterized protein.
    
 
 0.512
irld-33
Insulin/EGF-Receptor L Domain protein.
    
 
 0.510
srab-2
Serpentine Receptor, class AB (Class A-like).
      
 0.463
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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