STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xtr-2MX region of TRA-2 Related. (455 aa)    
Predicted Functional Partners:
F52D2.7
Uncharacterized protein.
      
 0.907
K03B8.8
Uncharacterized protein.
      
 0.907
T13F3.8
Uncharacterized protein.
      
 0.907
ckb-3
Putative choline kinase B3; Belongs to the choline/ethanolamine kinase family.
   
  
 0.855
pho-10
Putative acid phosphatase 10.
      
 0.811
ceh-8
Homeobox protein ceh-8.
      
 0.808
R11A5.3
Uncharacterized protein.
      
 0.806
sdz-1
Skn-1 dependent zygotic transcript 1 protein; May have a role in mesendoderm development during embryogenesis.
      
 0.758
fbxc-40
F-box C protein.
      
 0.698
C26B9.6
Uncharacterized protein.
      
 0.697
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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