F28H6.7 protein (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F28H6.7

Uncharacterized protein. (75 aa)

Predicted Functional Partners:

C39D10.1

0.463

M01G4.1

0.463

Y73C8C.12

0.455

C02B8.7

0.447

T26E4.18

0.439

Y73B3A.8

0.426

F55D1.1

0.424

C47C12.2

0.422

Y54C5A.1

0.422

Y75D11A.6

0.422

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C02B8.7	C39D10.1	C02B8.7.1	C39D10.1.1	Uncharacterized protein C02B8.7.	Uncharacterized protein.	0.578
C02B8.7	C47C12.2	C02B8.7.1	C47C12.2.1	Uncharacterized protein C02B8.7.	annotation not available	0.578
C02B8.7	F28H6.7	C02B8.7.1	F28H6.7.1	Uncharacterized protein C02B8.7.	Uncharacterized protein.	0.447
C02B8.7	F55D1.1	C02B8.7.1	F55D1.1.1	Uncharacterized protein C02B8.7.	Uncharacterized protein.	0.578
C02B8.7	M01G4.1	C02B8.7.1	M01G4.1.1	Uncharacterized protein C02B8.7.	Uncharacterized protein.	0.578
C02B8.7	T26E4.18	C02B8.7.1	T26E4.18.1	Uncharacterized protein C02B8.7.	Uncharacterized protein.	0.578
C02B8.7	Y54C5A.1	C02B8.7.1	Y54C5A.1.1	Uncharacterized protein C02B8.7.	Uncharacterized protein.	0.578
C02B8.7	Y73B3A.8	C02B8.7.1	Y73B3A.8.1	Uncharacterized protein C02B8.7.	annotation not available	0.578
C02B8.7	Y73C8C.12	C02B8.7.1	Y73C8C.12.1	Uncharacterized protein C02B8.7.	Uncharacterized protein.	0.578
C02B8.7	Y75D11A.6	C02B8.7.1	Y75D11A.6.1	Uncharacterized protein C02B8.7.	Uncharacterized protein.	0.578
C39D10.1	C02B8.7	C39D10.1.1	C02B8.7.1	Uncharacterized protein.	Uncharacterized protein C02B8.7.	0.578
C39D10.1	C47C12.2	C39D10.1.1	C47C12.2.1	Uncharacterized protein.	annotation not available	0.578
C39D10.1	F28H6.7	C39D10.1.1	F28H6.7.1	Uncharacterized protein.	Uncharacterized protein.	0.463
C39D10.1	F55D1.1	C39D10.1.1	F55D1.1.1	Uncharacterized protein.	Uncharacterized protein.	0.578
C39D10.1	M01G4.1	C39D10.1.1	M01G4.1.1	Uncharacterized protein.	Uncharacterized protein.	0.578
C39D10.1	T26E4.18	C39D10.1.1	T26E4.18.1	Uncharacterized protein.	Uncharacterized protein.	0.578
C39D10.1	Y54C5A.1	C39D10.1.1	Y54C5A.1.1	Uncharacterized protein.	Uncharacterized protein.	0.578
C39D10.1	Y73B3A.8	C39D10.1.1	Y73B3A.8.1	Uncharacterized protein.	annotation not available	0.578
C39D10.1	Y73C8C.12	C39D10.1.1	Y73C8C.12.1	Uncharacterized protein.	Uncharacterized protein.	0.578
C39D10.1	Y75D11A.6	C39D10.1.1	Y75D11A.6.1	Uncharacterized protein.	Uncharacterized protein.	0.578