STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chtl-1Choline transporter-like protein 1; Belongs to the CTL (choline transporter-like) family. (773 aa)    
Predicted Functional Partners:
pzf-1
Paired Zinc Finger protein.
   
  
 0.753
C17H11.2
Uncharacterized protein.
   
  
 0.718
C49F5.3
Uncharacterized protein.
   
  
 0.717
ent-5
Equilibrative Nucleoside Transporter.
   
  
 0.716
F16B12.6
Uncharacterized protein.
   
  
 0.708
ppt-1
Palmitoyl-protein thioesterase 1; Removes thioester-linked fatty acyl groups such as palmitate from modified cysteine residues in proteins or peptides.
   
  
 0.696
cpg-3
Chondroitin proteoglycan 3.
   
  
 0.597
ogt-1
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase; Addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine.
   
    0.591
T20F5.6
RING-type domain-containing protein.
   
  
 0.476
spin-1
MFS domain-containing protein.
      
 0.474
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
Server load: low (22%) [HD]