exos-9 protein (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

exos-9

EXOSome (Multiexonuclease complex) component. (434 aa)

Predicted Functional Partners:

exos-4.1

0.999

crn-5

0.999

exos-7

0.999

exos-3

0.999

exos-1

0.999

exos-2

0.999

exos-8

0.998

Y51H7C.7

0.998

exos-4.2

0.998

crn-3

0.997

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Y51H7C.7	crn-3	Y51H7C.7.1	C14A4.4a.1	Uncharacterized protein.	HRDC domain-containing protein.	0.999
Y51H7C.7	crn-5	Y51H7C.7.1	C14A4.5.1	Uncharacterized protein.	RNase_PH domain-containing protein.	0.997
Y51H7C.7	exos-1	Y51H7C.7.1	Y48A6B.5.1	Uncharacterized protein.	ECR1_N domain-containing protein.	0.998
Y51H7C.7	exos-2	Y51H7C.7.1	Y73B6BL.3.1	Uncharacterized protein.	EXOSome (Multiexonuclease complex) component.	0.997
Y51H7C.7	exos-3	Y51H7C.7.1	F59C6.4.1	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.985
Y51H7C.7	exos-4.1	Y51H7C.7.1	B0564.1a.1	Uncharacterized protein.	Putative exosome complex component RRP41; Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events; Belongs to the RNase PH family.	0.982
Y51H7C.7	exos-4.2	Y51H7C.7.1	Y6D11A.1.1	Uncharacterized protein.	RNase_PH domain-containing protein.	0.967
Y51H7C.7	exos-7	Y51H7C.7.1	F31D4.1.1	Uncharacterized protein.	RNase_PH domain-containing protein.	0.983
Y51H7C.7	exos-8	Y51H7C.7.1	F41G3.14.2	Uncharacterized protein.	RNase_PH domain-containing protein.	0.964
Y51H7C.7	exos-9	Y51H7C.7.1	F37C12.13a.2	Uncharacterized protein.	EXOSome (Multiexonuclease complex) component.	0.998
crn-3	Y51H7C.7	C14A4.4a.1	Y51H7C.7.1	HRDC domain-containing protein.	Uncharacterized protein.	0.999
crn-3	crn-5	C14A4.4a.1	C14A4.5.1	HRDC domain-containing protein.	RNase_PH domain-containing protein.	0.999
crn-3	exos-1	C14A4.4a.1	Y48A6B.5.1	HRDC domain-containing protein.	ECR1_N domain-containing protein.	0.997
crn-3	exos-2	C14A4.4a.1	Y73B6BL.3.1	HRDC domain-containing protein.	EXOSome (Multiexonuclease complex) component.	0.997
crn-3	exos-3	C14A4.4a.1	F59C6.4.1	HRDC domain-containing protein.	KH_dom_type_1 domain-containing protein.	0.997
crn-3	exos-4.1	C14A4.4a.1	B0564.1a.1	HRDC domain-containing protein.	Putative exosome complex component RRP41; Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events; Belongs to the RNase PH family.	0.999
crn-3	exos-4.2	C14A4.4a.1	Y6D11A.1.1	HRDC domain-containing protein.	RNase_PH domain-containing protein.	0.998
crn-3	exos-7	C14A4.4a.1	F31D4.1.1	HRDC domain-containing protein.	RNase_PH domain-containing protein.	0.997
crn-3	exos-8	C14A4.4a.1	F41G3.14.2	HRDC domain-containing protein.	RNase_PH domain-containing protein.	0.967
crn-3	exos-9	C14A4.4a.1	F37C12.13a.2	HRDC domain-containing protein.	EXOSome (Multiexonuclease complex) component.	0.997