STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
irg-7Protein irg-7; Plays a role in innate immunity, probably via the atf-7 pathway, to confer resistance to pathogenic bacteria. May also play a role in the regulation of longevity. (2217 aa)    
Predicted Functional Partners:
T25C12.3
Uncharacterized protein.
   
 
0.811
Y34B4A.6
Uncharacterized protein.
   
 
 0.747
nep-17
NEPrilysin metallopeptidase family.
   
  
 0.736
F57F4.4
Uncharacterized protein.
   
  
 0.713
B0280.9
U3 small nucleolar RNA-associated protein 18 homolog; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the WD repeat UTP18 family.
      
 0.698
M106.7
RPOL4c domain-containing protein.
      
 0.698
F26E4.4
Uncharacterized protein.
      
 0.694
T22F7.3
Uncharacterized protein.
      
 0.691
ZC84.1
Uncharacterized protein ZC84.1.
      
 0.691
rbm-17
RNA Binding Motif protein homolog.
   
 
 0.686
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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