Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| F33D11.10 | mag-1 | F33D11.10.1 | R09B3.5.1 | Uncharacterized protein; Belongs to the DEAD box helicase family. | Protein mago nashi homolog; Involved in hermaphrodite germline sex determination. May allow oogenesis by inhibiting the function of one or more of the masculinizing genes (fog, fem, and gld) which act during the fourth larval stage to promote transient sperm production in the hermaphrodite germline; Belongs to the mago nashi family. | 0.995 |
| F33D11.10 | rnp-4 | F33D11.10.1 | R07E5.14.1 | Uncharacterized protein; Belongs to the DEAD box helicase family. | RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. | 0.999 |
| F33D11.10 | rnp-5 | F33D11.10.1 | K02F3.11.1 | Uncharacterized protein; Belongs to the DEAD box helicase family. | RRM domain-containing protein. | 0.985 |
| F33D11.10 | rsr-1 | F33D11.10.1 | F28D9.1.2 | Uncharacterized protein; Belongs to the DEAD box helicase family. | PWI domain-containing protein. | 0.689 |
| F33D11.10 | smg-1 | F33D11.10.1 | C48B6.6a.1 | Uncharacterized protein; Belongs to the DEAD box helicase family. | Serine/threonine-protein kinase smg-1; Serine/threonine protein kinase involved in mRNA surveillance. Recognizes the substrate consensus sequence [ST]-Q. Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons by phosphorylating smg-2. | 0.970 |
| F33D11.10 | smg-2 | F33D11.10.1 | Y48G8AL.6.2 | Uncharacterized protein; Belongs to the DEAD box helicase family. | Regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an smg-2-3-4 surveillance complex is believed to activate NMD (By similarity). | 0.900 |
| F33D11.10 | smg-3 | F33D11.10.1 | Y73B6BL.18b.1 | Uncharacterized protein; Belongs to the DEAD box helicase family. | Suppressor with Morphological effect on Genitalia. | 0.830 |
| F33D11.10 | smg-4 | F33D11.10.1 | F46B6.3b.1 | Uncharacterized protein; Belongs to the DEAD box helicase family. | Smg4_UPF3 domain-containing protein. | 0.967 |
| F33D11.10 | smg-5 | F33D11.10.1 | W02D3.8.1 | Uncharacterized protein; Belongs to the DEAD box helicase family. | Nonsense-mediated mRNA decay protein. | 0.839 |
| F33D11.10 | smg-6 | F33D11.10.1 | Y54F10AL.2a.1 | Uncharacterized protein; Belongs to the DEAD box helicase family. | PINc domain-containing protein. | 0.790 |
| mag-1 | F33D11.10 | R09B3.5.1 | F33D11.10.1 | Protein mago nashi homolog; Involved in hermaphrodite germline sex determination. May allow oogenesis by inhibiting the function of one or more of the masculinizing genes (fog, fem, and gld) which act during the fourth larval stage to promote transient sperm production in the hermaphrodite germline; Belongs to the mago nashi family. | Uncharacterized protein; Belongs to the DEAD box helicase family. | 0.995 |
| mag-1 | rnp-4 | R09B3.5.1 | R07E5.14.1 | Protein mago nashi homolog; Involved in hermaphrodite germline sex determination. May allow oogenesis by inhibiting the function of one or more of the masculinizing genes (fog, fem, and gld) which act during the fourth larval stage to promote transient sperm production in the hermaphrodite germline; Belongs to the mago nashi family. | RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. | 0.999 |
| mag-1 | rnp-5 | R09B3.5.1 | K02F3.11.1 | Protein mago nashi homolog; Involved in hermaphrodite germline sex determination. May allow oogenesis by inhibiting the function of one or more of the masculinizing genes (fog, fem, and gld) which act during the fourth larval stage to promote transient sperm production in the hermaphrodite germline; Belongs to the mago nashi family. | RRM domain-containing protein. | 0.871 |
| mag-1 | rsr-1 | R09B3.5.1 | F28D9.1.2 | Protein mago nashi homolog; Involved in hermaphrodite germline sex determination. May allow oogenesis by inhibiting the function of one or more of the masculinizing genes (fog, fem, and gld) which act during the fourth larval stage to promote transient sperm production in the hermaphrodite germline; Belongs to the mago nashi family. | PWI domain-containing protein. | 0.816 |
| mag-1 | smg-1 | R09B3.5.1 | C48B6.6a.1 | Protein mago nashi homolog; Involved in hermaphrodite germline sex determination. May allow oogenesis by inhibiting the function of one or more of the masculinizing genes (fog, fem, and gld) which act during the fourth larval stage to promote transient sperm production in the hermaphrodite germline; Belongs to the mago nashi family. | Serine/threonine-protein kinase smg-1; Serine/threonine protein kinase involved in mRNA surveillance. Recognizes the substrate consensus sequence [ST]-Q. Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons by phosphorylating smg-2. | 0.650 |
| mag-1 | smg-2 | R09B3.5.1 | Y48G8AL.6.2 | Protein mago nashi homolog; Involved in hermaphrodite germline sex determination. May allow oogenesis by inhibiting the function of one or more of the masculinizing genes (fog, fem, and gld) which act during the fourth larval stage to promote transient sperm production in the hermaphrodite germline; Belongs to the mago nashi family. | Regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an smg-2-3-4 surveillance complex is believed to activate NMD (By similarity). | 0.822 |
| mag-1 | smg-3 | R09B3.5.1 | Y73B6BL.18b.1 | Protein mago nashi homolog; Involved in hermaphrodite germline sex determination. May allow oogenesis by inhibiting the function of one or more of the masculinizing genes (fog, fem, and gld) which act during the fourth larval stage to promote transient sperm production in the hermaphrodite germline; Belongs to the mago nashi family. | Suppressor with Morphological effect on Genitalia. | 0.840 |
| mag-1 | smg-4 | R09B3.5.1 | F46B6.3b.1 | Protein mago nashi homolog; Involved in hermaphrodite germline sex determination. May allow oogenesis by inhibiting the function of one or more of the masculinizing genes (fog, fem, and gld) which act during the fourth larval stage to promote transient sperm production in the hermaphrodite germline; Belongs to the mago nashi family. | Smg4_UPF3 domain-containing protein. | 0.988 |
| mag-1 | smg-5 | R09B3.5.1 | W02D3.8.1 | Protein mago nashi homolog; Involved in hermaphrodite germline sex determination. May allow oogenesis by inhibiting the function of one or more of the masculinizing genes (fog, fem, and gld) which act during the fourth larval stage to promote transient sperm production in the hermaphrodite germline; Belongs to the mago nashi family. | Nonsense-mediated mRNA decay protein. | 0.456 |
| mag-1 | smg-6 | R09B3.5.1 | Y54F10AL.2a.1 | Protein mago nashi homolog; Involved in hermaphrodite germline sex determination. May allow oogenesis by inhibiting the function of one or more of the masculinizing genes (fog, fem, and gld) which act during the fourth larval stage to promote transient sperm production in the hermaphrodite germline; Belongs to the mago nashi family. | PINc domain-containing protein. | 0.723 |
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