STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsen-54tRNA_int_end_N2 domain-containing protein. (335 aa)    
Predicted Functional Partners:
tsen-2
tRNA_int_endo domain-containing protein.
   
 0.996
tsen-34
tRNA_int_endo domain-containing protein.
   
 
 0.990
rars-2
DALR_1 domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  
 0.913
trm-2A
RRM domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
   
  
 0.718
secs-1
O-phosphoseryl-tRNA(Sec) selenium transferase; Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis. Belongs to the SepSecS family.
   
  
 0.707
srsx-34
Serpentine Receptor, class SX.
      
 0.692
nhr-61
Nuclear hormone receptor family member nhr-61; Orphan nuclear receptor.
   
  
 0.692
nceh-1
Neutral Cholesterol Ester Hydrolase homolog.
      
 0.691
mans-3
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
      
 0.668
hrpu-1
B30.2/SPRY domain-containing protein.
   
  
 0.663
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.