Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
arx-6 | slx-1 | C35D10.16.1 | F56A3.2.1 | Probable actin-related protein 2/3 complex subunit 4; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament (By similarity). | Structure-specific endonuclease subunit SLX1 homolog; Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA (Potential). Has a preference for replication forks over 5' flap structures or Holliday junctions and shows much lower activity toward 3' flap structures. Required for proper crossover distribution through inhibition of crossover formation at the c [...] | 0.926 |
ercc-1 | exo-1 | F10G8.7.2 | F45G2.3.1 | ERCC (DNA excision repair protein) homolog. | EXOnuclease. | 0.951 |
ercc-1 | gen-1 | F10G8.7.2 | T12A2.8.2 | ERCC (DNA excision repair protein) homolog. | GEN1 Holliday junction resolvase homolog. | 0.927 |
ercc-1 | him-18 | F10G8.7.2 | T04A8.15.1 | ERCC (DNA excision repair protein) homolog. | High Incidence of Males (Increased X chromosome loss). | 0.964 |
ercc-1 | him-6 | F10G8.7.2 | T04A11.6.1 | ERCC (DNA excision repair protein) homolog. | Bloom syndrome protein homolog; Participates in DNA replication and repair (By similarity). Exhibits a magnesium-dependent ATP-dependent DNA-helicase activity that unwinds single- and double-stranded DNA in a 3'-5' direction (By similarity). Negatively regulates sister chromatid exchange (SCE) ; Belongs to the helicase family. RecQ subfamily. | 0.670 |
ercc-1 | mlh-1 | F10G8.7.2 | T28A8.7.1 | ERCC (DNA excision repair protein) homolog. | DNA_mis_repair domain-containing protein. | 0.909 |
ercc-1 | mus-81 | F10G8.7.2 | C43E11.2a.1 | ERCC (DNA excision repair protein) homolog. | ERCC4 domain-containing protein. | 0.997 |
ercc-1 | slx-1 | F10G8.7.2 | F56A3.2.1 | ERCC (DNA excision repair protein) homolog. | Structure-specific endonuclease subunit SLX1 homolog; Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA (Potential). Has a preference for replication forks over 5' flap structures or Holliday junctions and shows much lower activity toward 3' flap structures. Required for proper crossover distribution through inhibition of crossover formation at the c [...] | 0.987 |
ercc-1 | top-3 | F10G8.7.2 | Y56A3A.27.1 | ERCC (DNA excision repair protein) homolog. | DNA topoisomerase 3; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)- enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Fina [...] | 0.601 |
ercc-1 | xpf-1 | F10G8.7.2 | C47D12.8.1 | ERCC (DNA excision repair protein) homolog. | ERCC4 domain-containing protein. | 0.999 |
exo-1 | ercc-1 | F45G2.3.1 | F10G8.7.2 | EXOnuclease. | ERCC (DNA excision repair protein) homolog. | 0.951 |
exo-1 | gen-1 | F45G2.3.1 | T12A2.8.2 | EXOnuclease. | GEN1 Holliday junction resolvase homolog. | 0.606 |
exo-1 | him-18 | F45G2.3.1 | T04A8.15.1 | EXOnuclease. | High Incidence of Males (Increased X chromosome loss). | 0.788 |
exo-1 | him-6 | F45G2.3.1 | T04A11.6.1 | EXOnuclease. | Bloom syndrome protein homolog; Participates in DNA replication and repair (By similarity). Exhibits a magnesium-dependent ATP-dependent DNA-helicase activity that unwinds single- and double-stranded DNA in a 3'-5' direction (By similarity). Negatively regulates sister chromatid exchange (SCE) ; Belongs to the helicase family. RecQ subfamily. | 0.992 |
exo-1 | mlh-1 | F45G2.3.1 | T28A8.7.1 | EXOnuclease. | DNA_mis_repair domain-containing protein. | 0.998 |
exo-1 | mus-81 | F45G2.3.1 | C43E11.2a.1 | EXOnuclease. | ERCC4 domain-containing protein. | 0.986 |
exo-1 | slx-1 | F45G2.3.1 | F56A3.2.1 | EXOnuclease. | Structure-specific endonuclease subunit SLX1 homolog; Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA (Potential). Has a preference for replication forks over 5' flap structures or Holliday junctions and shows much lower activity toward 3' flap structures. Required for proper crossover distribution through inhibition of crossover formation at the c [...] | 0.950 |
exo-1 | top-3 | F45G2.3.1 | Y56A3A.27.1 | EXOnuclease. | DNA topoisomerase 3; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)- enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Fina [...] | 0.968 |
exo-1 | xpf-1 | F45G2.3.1 | C47D12.8.1 | EXOnuclease. | ERCC4 domain-containing protein. | 0.947 |
gen-1 | ercc-1 | T12A2.8.2 | F10G8.7.2 | GEN1 Holliday junction resolvase homolog. | ERCC (DNA excision repair protein) homolog. | 0.927 |
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