madf-3 protein (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

madf-3

MADF domain transcription factor. (312 aa)

Predicted Functional Partners:

nol-6

0.697

C08B6.8

0.578

herc-1

0.504

M02B7.7

0.469

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C08B6.8	madf-3	C08B6.8a.1	H20J04.3.1	Probable oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	MADF domain transcription factor.	0.578
M02B7.7	madf-3	M02B7.7.1	H20J04.3.1	Uncharacterized protein.	MADF domain transcription factor.	0.469
herc-1	madf-3	Y48G8AL.1a.1	H20J04.3.1	HECT domain-containing protein.	MADF domain transcription factor.	0.504
madf-3	C08B6.8	H20J04.3.1	C08B6.8a.1	MADF domain transcription factor.	Probable oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	0.578
madf-3	M02B7.7	H20J04.3.1	M02B7.7.1	MADF domain transcription factor.	Uncharacterized protein.	0.469
madf-3	herc-1	H20J04.3.1	Y48G8AL.1a.1	MADF domain transcription factor.	HECT domain-containing protein.	0.504
madf-3	nol-6	H20J04.3.1	Y51H7C.11.1	MADF domain transcription factor.	Nucleolar protein 6.	0.697
nol-6	madf-3	Y51H7C.11.1	H20J04.3.1	Nucleolar protein 6.	MADF domain transcription factor.	0.697