STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
K08D12.6Uncharacterized protein. (668 aa)    
Predicted Functional Partners:
F11E6.3
Uncharacterized protein.
   
   
0.579
col-42
Col_cuticle_N domain-containing protein.
   
   0.567
col-103
Col_cuticle_N domain-containing protein.
   
   0.532
col-160
Col_cuticle_N domain-containing protein.
   
   0.495
col-80
Putative cuticle collagen 80; Nematode cuticles are composed largely of collagen-like proteins. The cuticle functions both as an exoskeleton and as a barrier to protect the worm from its environment (By similarity).
   
   0.483
col-98
Col_cuticle_N domain-containing protein.
   
   0.480
col-142
Col_cuticle_N domain-containing protein.
   
   0.477
T15B7.1
Uncharacterized protein.
   
 
 0.438
col-93
Col_cuticle_N domain-containing protein.
   
   0.404
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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