STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R07E3.1Uncharacterized protein; Belongs to the peptidase C1 family. (402 aa)    
Predicted Functional Partners:
cpf-1
WD_REPEATS_REGION domain-containing protein.
      
 0.894
pcp-1
Putative serine protease pcp-1; Belongs to the peptidase S28 family.
   
  
 0.881
F56F10.1
Putative serine protease F56F10.1; Belongs to the peptidase S28 family.
   
  
 0.762
trd-1
Tetratricopeptide repeat-containing protein trd-1; Developmental protein required for cell fate determination in both the germline and seam cells of the developing epidermis. Specifically, involved in sex determination and may function in parallel or downstream of other sex determination factors, including tra-2 and fem-3, to promote oogenesis in its role in the regulation of the switch from spermatogenesis to oogenesis in the gonads. Also implicated in the mitosis to meiosis switch in distal tip cells.
   
  
 0.699
cpz-2
Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.
  
 
0.651
T28H10.3
Uncharacterized protein.
   
  
 0.570
F09B12.3
Putative phospholipase B-like 2; Putative phospholipase; Belongs to the phospholipase B-like family.
   
    0.539
pgrn-1
ProGRaNulin homolog.
   
 
 0.505
Y54F10AM.8
Putative phospholipase B-like 3; Putative phospholipase; Belongs to the phospholipase B-like family.
   
    0.436
scav-1
Uncharacterized protein C03F11.3.
   
    0.431
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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