STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cnc-1CaeNaCin (Caenorhabditis bacteriocin). (62 aa)    
Predicted Functional Partners:
cnc-5
CaeNaCin (Caenorhabditis bacteriocin).
   
  
 0.879
cnc-11
CaeNaCin (Caenorhabditis bacteriocin).
      
 0.806
nlp-34
Neuropeptide-Like Protein.
      
 0.758
nlp-27
Neuropeptide-Like Protein.
      
 0.758
nlp-31
Neuropeptide-like protein 31; Antimicrobial peptides that have antifungal activity against D.coniospora. Has weak antibacterial activity against Gram-positive bacteria M.luteus and Gram-negative E.coli.
   
  
 0.700
clec-47
C-type lectin domain-containing protein.
      
 0.694
nlp-29
Neuropeptide-like protein 29; Antimicrobial peptides that have antibacterial activity against the Gram-negative bacteria S.marcescens. Has antifungal activity against D.coniospora. May play a role in response to physical injury and osmotic stress ; Belongs to the YARP (YGGW-amide related peptide) family.
   
  
 0.593
nlp-30
Neuropeptide-like protein 30; May have antimicrobial activity. May play a role in response to fungal infection; Belongs to the YARP (YGGW-amide related peptide) family.
   
  
 0.589
nlp-28
Neuropeptide-like protein 28; May have antimicrobial activity; Belongs to the YARP (YGGW-amide related peptide) family.
   
  
 0.555
abf-3
AntiBacterial Factor related.
   
  
 0.410
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.