STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R09F10.8Uncharacterized protein. (372 aa)    
Predicted Functional Partners:
pzf-1
Paired Zinc Finger protein.
   
    0.538
try-1
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
   
    0.536
R04D3.3
Uncharacterized protein.
   
   
0.535
mex-6
Zinc finger protein mex-6; Functions with mex-5 to affect embryonic viability, establish soma germline asymmetry in embryos and establish plk-1, pie-1, mex-1, and pos-1 asymmetry in embryos. Also affects formation of intestinal cells.
   
    0.518
meg-1
Uncharacterized protein.
   
    0.516
F54D10.7
Ubiquitin-like domain-containing protein.
   
    0.502
C04B4.2
Uncharacterized protein.
   
    0.482
rgs-9
Regulator of G-protein signaling rgs-9.
   
    0.452
F02E8.4
Uncharacterized protein.
   
    0.441
ZK829.9
MFS domain-containing protein.
   
    0.437
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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