STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ferl-1FER-1 Like. (898 aa)    
Predicted Functional Partners:
snt-4
SyNapTotagmin.
   
  
 0.657
snt-3
SyNapTotagmin.
   
  
 0.623
snt-5
SyNapTotagmin.
   
  
 0.621
snt-7
C2 domain-containing protein.
   
  
 0.621
snt-6
C2 domain-containing protein.
   
  
 0.593
F16F9.4
Uncharacterized protein.
   
  
 0.487
exl-1
Chloride intracellular channel exl-1; Probable chloride channel; Belongs to the chloride channel CLIC family.
      
 0.477
ham-1
Stork_head domain-containing protein.
      
 0.457
H12I13.1
Ubiquitin carboxyl-terminal hydrolase.
   
    0.430
B0205.6
Aminotran_5 domain-containing protein.
      
 0.407
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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