STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pat-12annotation not available (1030 aa)    
Predicted Functional Partners:
vab-10
GAR domain-containing protein.
   
 
 0.804
R148.3
Uncharacterized protein.
   
  
 0.700
noah-1
NOmpA Homolog (Drosophila nompA: no mechanoreceptor potential A).
      
 0.690
wrt-3
Warthog protein 3; Intercellular signal essential for a variety of patterning events during development.
      
 0.660
let-805
Myotactin form B.
   
  
 0.596
glf-1
Amino_oxidase domain-containing protein.
      
 0.549
mlt-11
Uncharacterized protein.
   
  
 0.542
mlt-8
Uncharacterized protein.
   
  
 0.536
mlt-9
Uncharacterized protein.
      
 0.535
mup-4
Transmembrane matrix receptor MUP-4; Required for junctional attachments between hypodermis and muscle, and between the apical epithelial surface and the cuticular matrix. Essential for enclosure of the embryo by the hypodermis, hypodermal integrity, embryo elongation, and maintenance of hypodermal morphology in fully elongated embryos.
   
  
 0.487
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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