STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bath-25BTB domain-containing protein. (298 aa)    
Predicted Functional Partners:
cal-5
CALmodulin related genes.
      
 0.850
efhd-1
EF HanD calcium binding protein.
      
 0.850
ncs-4
Neuronal Calcium Sensor family.
      
 0.806
C56A3.6
Uncharacterized protein.
      
 0.698
ehs-1
Eps15 (Endocytosis protein) Homologous Sequence.
      
 0.626
chpf-1
Calcineurin-like EF-Hand Protein Family member.
      
 0.534
C30E1.4
Uncharacterized protein.
   
   0.501
tpst-2
Putative protein-tyrosine sulfotransferase; Catalyzes the O-sulfation of tyrosine residues within acidic motifs of polypeptides, using 3'-phosphoadenylyl sulfate (PAPS) as cosubstrate; Belongs to the protein sulfotransferase family.
   
   0.465
srr-7
Serpentine Receptor, class R.
   
    0.461
math-6
MATH (Meprin-associated Traf homology) domain containing.
   
  
0.459
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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