STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lec-132 kDa beta-galactoside-binding lectin; Binds galactose. (285 aa)    
Predicted Functional Partners:
pals-28
Protein containing ALS2cr12 (ALS2CR12) signature.
    
 
 0.718
anmt-2
Amine N-MethylTransferase.
   
  
 0.705
Y75B8A.39
Uncharacterized protein.
      
 0.698
F53E10.6
RRP15-like protein; Belongs to the RRP15 family.
      
 0.697
lpd-6
Brix domain-containing protein.
      
 0.696
F54D5.9
F-box domain-containing protein.
      
 0.695
F54D1.6
Uncharacterized protein F54D1.6.
   
 
 0.679
tag-260
IRF-2BP1_2 domain-containing protein.
   
  
 0.667
C46C2.2
MFS domain-containing protein.
 
 
  
 0.664
T13H5.6
Uncharacterized protein.
      
 0.662
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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