STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc-37TeTratriCopeptide repeat domain protein related. (1114 aa)    
Predicted Functional Partners:
skih-2
SKI (Yeast SuperKIller) Helicase homolog.
   
 0.999
F02E9.10
WD_REPEATS_REGION domain-containing protein.
    
 0.998
mtr-4
mRNA transport homolog 4.
   
 
 0.913
exos-9
EXOSome (Multiexonuclease complex) component.
    
 0.867
K07A12.4
Tr-type G domain-containing protein.
   
 0.866
rps-30
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
   0.851
rack-1
Guanine nucleotide-binding protein subunit beta-2-like 1; Required for the expression of antimicrobial peptide nlp-29 in response to fungal infection or physical injury.
    
   0.851
F26A1.13
Smr domain-containing protein.
   
  
 0.847
crn-5
RNase_PH domain-containing protein.
    
 0.840
C28H8.3
Uncharacterized helicase C28H8.3.
   
 
 0.836
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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