inx-21 protein (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

inx-21

Innexin; Structural component of the gap junctions. Belongs to the pannexin family. (481 aa)

Predicted Functional Partners:

inx-14

0.816

inx-17

0.809

inx-20

0.807

inx-7

0.703

Y47G6A.26

0.697

Y47G6A.32

0.697

inx-22

0.670

Y47G6A.25

0.585

T28A8.4

0.575

Y14H12B.2

0.568

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T28A8.4	Y14H12B.2	T28A8.4.1	Y14H12B.2.1	Uncharacterized protein.	SPK domain-containing protein.	0.592
T28A8.4	Y47G6A.25	T28A8.4.1	Y47G6A.25.1	Uncharacterized protein.	Uncharacterized protein.	0.593
T28A8.4	inx-21	T28A8.4.1	Y47G6A.1.2	Uncharacterized protein.	Innexin; Structural component of the gap junctions. Belongs to the pannexin family.	0.575
T28A8.4	inx-22	T28A8.4.1	Y47G6A.2.2	Uncharacterized protein.	Innexin; Structural component of the gap junctions. Belongs to the pannexin family.	0.584
Y14H12B.2	T28A8.4	Y14H12B.2.1	T28A8.4.1	SPK domain-containing protein.	Uncharacterized protein.	0.592
Y14H12B.2	Y47G6A.25	Y14H12B.2.1	Y47G6A.25.1	SPK domain-containing protein.	Uncharacterized protein.	0.592
Y14H12B.2	inx-21	Y14H12B.2.1	Y47G6A.1.2	SPK domain-containing protein.	Innexin; Structural component of the gap junctions. Belongs to the pannexin family.	0.568
Y14H12B.2	inx-22	Y14H12B.2.1	Y47G6A.2.2	SPK domain-containing protein.	Innexin; Structural component of the gap junctions. Belongs to the pannexin family.	0.639
Y47G6A.25	T28A8.4	Y47G6A.25.1	T28A8.4.1	Uncharacterized protein.	Uncharacterized protein.	0.593
Y47G6A.25	Y14H12B.2	Y47G6A.25.1	Y14H12B.2.1	Uncharacterized protein.	SPK domain-containing protein.	0.592
Y47G6A.25	inx-21	Y47G6A.25.1	Y47G6A.1.2	Uncharacterized protein.	Innexin; Structural component of the gap junctions. Belongs to the pannexin family.	0.585
Y47G6A.25	inx-22	Y47G6A.25.1	Y47G6A.2.2	Uncharacterized protein.	Innexin; Structural component of the gap junctions. Belongs to the pannexin family.	0.592
Y47G6A.26	Y47G6A.32	Y47G6A.26.1	Y47G6A.32.1	Uncharacterized protein.	Uncharacterized protein.	0.895
Y47G6A.26	inx-14	Y47G6A.26.1	F07A5.1b.1	Uncharacterized protein.	Innexin-14; Structural component of the gap junctions.	0.550
Y47G6A.26	inx-21	Y47G6A.26.1	Y47G6A.1.2	Uncharacterized protein.	Innexin; Structural component of the gap junctions. Belongs to the pannexin family.	0.697
Y47G6A.26	inx-22	Y47G6A.26.1	Y47G6A.2.2	Uncharacterized protein.	Innexin; Structural component of the gap junctions. Belongs to the pannexin family.	0.660
Y47G6A.32	Y47G6A.26	Y47G6A.32.1	Y47G6A.26.1	Uncharacterized protein.	Uncharacterized protein.	0.895
Y47G6A.32	inx-14	Y47G6A.32.1	F07A5.1b.1	Uncharacterized protein.	Innexin-14; Structural component of the gap junctions.	0.550
Y47G6A.32	inx-21	Y47G6A.32.1	Y47G6A.1.2	Uncharacterized protein.	Innexin; Structural component of the gap junctions. Belongs to the pannexin family.	0.697
Y47G6A.32	inx-22	Y47G6A.32.1	Y47G6A.2.2	Uncharacterized protein.	Innexin; Structural component of the gap junctions. Belongs to the pannexin family.	0.660