STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
efhc-1EF-Hand domain-Containing protein 1 homolog. (447 aa)    
Predicted Functional Partners:
pcrg-1
Parkin Co-Regulated Gene (PACRG) homolog.
  
 
 0.993
C54C6.6
Cilia- and flagella-associated protein 20; Cilium- and flagellum-specific protein that plays a role in axonemal structure organization and motility; Belongs to the CFAP20 family.
    
 
 0.922
E04F6.6
Uncharacterized protein.
      
 0.810
elpc-4
Putative elongator complex protein 4; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. The elongator complex catalyzes formation of carboxymethyluridine in the wobble base at position 34 in tRNAs; Belongs to the ELP4 family.
      
 0.716
R10F2.4
Uncharacterized protein.
   
  
 0.706
R10F2.5
Uncharacterized protein.
   
  
 0.701
cpn-2
Transgelin; Belongs to the calponin family.
   
 
 0.684
cpn-3
Calponin-homology (CH) domain-containing protein.
   
 
 0.684
cpn-1
Calponin-homology (CH) domain-containing protein.
   
 
 0.684
cpn-4
Calponin-homology (CH) domain-containing protein.
   
 
 0.684
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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