Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Y54G2A.50 | Y73F8A.24 | Y54G2A.50.1 | Y73F8A.24c.1 | Uncharacterized protein. | General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | 0.725 |
Y54G2A.50 | cyh-1 | Y54G2A.50.1 | Y49F6B.1.1 | Uncharacterized protein. | CYclin H. | 0.717 |
Y54G2A.50 | gtf-2H1 | Y54G2A.50.1 | R02D3.3a.1 | Uncharacterized protein. | General Transcription Factor homolog. | 0.730 |
Y54G2A.50 | gtf-2H2C | Y54G2A.50.1 | T16H12.4.2 | Uncharacterized protein. | General transcription factor IIH subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been established, TFII [...] | 0.730 |
Y54G2A.50 | gtf-2H3 | Y54G2A.50.1 | ZK1128.4.1 | Uncharacterized protein. | General Transcription Factor homolog. | 0.724 |
Y54G2A.50 | mlh-1 | Y54G2A.50.1 | T28A8.7.1 | Uncharacterized protein. | DNA_mis_repair domain-containing protein. | 0.737 |
Y54G2A.50 | mnat-1 | Y54G2A.50.1 | F53G2.7.1 | Uncharacterized protein. | CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. | 0.721 |
Y54G2A.50 | mre-11 | Y54G2A.50.1 | ZC302.1.2 | Uncharacterized protein. | Double-strand break repair protein mre-11; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. In response to ionizing radiation, probably required for the association between the brc-1-brd-1 heterodimer and rad-51 and let-70 in order to activate E3-ubiquitin ligase activity of the heterodimer and induce ubiquitination at DNA damage sites. Belongs to the MRE11/RAD32 family. | 0.723 |
Y54G2A.50 | mus-101 | Y54G2A.50.1 | F37D6.1.1 | Uncharacterized protein. | Uncharacterized protein. | 0.735 |
Y54G2A.50 | xpb-1 | Y54G2A.50.1 | Y66D12A.15.3 | Uncharacterized protein. | XPB (Xeroderma Pigmentosum complementation group B) related. | 0.732 |
Y73F8A.24 | Y54G2A.50 | Y73F8A.24c.1 | Y54G2A.50.1 | General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | Uncharacterized protein. | 0.725 |
Y73F8A.24 | cyh-1 | Y73F8A.24c.1 | Y49F6B.1.1 | General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | CYclin H. | 0.981 |
Y73F8A.24 | gtf-2H1 | Y73F8A.24c.1 | R02D3.3a.1 | General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | General Transcription Factor homolog. | 0.998 |
Y73F8A.24 | gtf-2H2C | Y73F8A.24c.1 | T16H12.4.2 | General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | General transcription factor IIH subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been established, TFII [...] | 0.998 |
Y73F8A.24 | gtf-2H3 | Y73F8A.24c.1 | ZK1128.4.1 | General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | General Transcription Factor homolog. | 0.998 |
Y73F8A.24 | mlh-1 | Y73F8A.24c.1 | T28A8.7.1 | General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | DNA_mis_repair domain-containing protein. | 0.409 |
Y73F8A.24 | mnat-1 | Y73F8A.24c.1 | F53G2.7.1 | General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. | 0.997 |
Y73F8A.24 | xpb-1 | Y73F8A.24c.1 | Y66D12A.15.3 | General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | XPB (Xeroderma Pigmentosum complementation group B) related. | 0.999 |
cyh-1 | Y54G2A.50 | Y49F6B.1.1 | Y54G2A.50.1 | CYclin H. | Uncharacterized protein. | 0.717 |
cyh-1 | Y73F8A.24 | Y49F6B.1.1 | Y73F8A.24c.1 | CYclin H. | General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | 0.981 |
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