STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vamp-7V-SNARE coiled-coil homology domain-containing protein. (261 aa)    
Predicted Functional Partners:
snap-29
Soluble NSF attachment protein 29; SNAREs, soluble N-ethylmaleimide-sensitive factor-attachment protein receptors, are essential proteins for fusion of cellular membranes. SNAREs localized on opposing membranes assemble to form a trans-SNARE complex, an extended, parallel four alpha-helical bundle that drives membrane fusion; Belongs to the SNAP-25 family.
     
 0.966
syx-17
t-SNARE coiled-coil homology domain-containing protein.
   
 
 0.923
vamp-8
V-SNARE coiled-coil homology domain-containing protein.
  
 
0.908
prp-21
Yeast PRP (Splicing factor) related.
   
 
 0.907
T13H5.4
Matrin-type domain-containing protein.
   
 
 0.895
cdc-5L
Cell Division Cycle related.
   
 
 0.888
repo-1
Matrin-type domain-containing protein.
   
 
 0.883
memb-1
Golgi SNAP receptor complex member 2 homolog memb-1; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
   
 
 0.859
memb-2
Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
   
 
 0.857
nbet-1
t-SNARE coiled-coil homology domain-containing protein.
    
 0.857
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.