STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lec-5Galectin. (314 aa)    
Predicted Functional Partners:
lec-10
Galectin.
  
  
 0.823
lec-9
Galectin.
  
  
 0.768
R07H5.8
PfkB domain-containing protein.
      
 0.690
rla-0
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
  
 0.678
ttr-17
TransThyretin-Related family domain.
   
    0.551
csq-1
Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.
  
    0.507
lec-12
Galectin.
  
   
0.487
lec-8
Probable galaptin lec-8.
  
  
0.466
far-1
Fatty-acid and retinol-binding protein 1; Probably binds lipids; Belongs to the fatty-acid and retinol-binding protein (FARBP) family.
   
   0.465
ttr-47
TransThyretin-Related family domain.
   
    0.430
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.