STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZK180.3Protein RFT1 homolog; May be involved in N-linked oligosaccharide assembly. (522 aa)    
Predicted Functional Partners:
algn-1
Asparagine Linked Glycosylation (ALG) homolog, Nematode.
   
 
 0.752
algn-11
GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase; Mannosyltransferase involved in the last steps of the synthesis of Man5GlcNAc(2)-PP-dolichol core oligosaccharide on the cytoplasmic face of the endoplasmic reticulum. Catalyzes the addition of the 4th and 5th mannose residues to the dolichol-linked oligosaccharide chain.
   
 
 0.709
algn-2
Asparagine Linked Glycosylation (ALG) homolog, Nematode.
   
 
 0.695
algn-13
Glyco_tran_28_C domain-containing protein.
      
 0.561
rbm-28
RNA Binding Motif protein homolog.
      
 0.520
bus-8
Glycosyltransferase.
   
 
 0.511
pbs-1
Proteasome subunit beta.
 
      0.422
mrps-18A
Mitochondrial Ribosomal Protein, Small.
      
 0.410
B0334.5
Uncharacterized protein.
   
  
 0.408
dpm-3
Probable dolichol-phosphate mannosyltransferase subunit 3; Stabilizer subunit of the dolichol-phosphate-mannose synthase complex.
      
 0.407
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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