STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZK287.7Uncharacterized protein. (387 aa)    
Predicted Functional Partners:
pus-1
PseudoU_synth_1 domain-containing protein.
  
  
 0.710
tag-124
Probable tRNA pseudouridine synthase tag-124; Formation of pseudouridine at position 38 and 39 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
  
  
 0.678
Y73B6BL.29
tRNA pseudouridine synthase.
  
  
 0.666
Y43B11AR.3
Uncharacterized protein.
  
 
 0.657
dars-2
AA_TRNA_LIGASE_II domain-containing protein.
  
  
 0.651
K01G5.5
Putative H/ACA ribonucleoprotein complex subunit 4; Plays a central role in ribosomal RNA processing. Probable catalytic subunit of H/ACA small nucleolar ribonucleoprotein (H/ACA snoRNP) complex, which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ('psi') residues may serve to stabilize the conformation of rRNAs (By similarity); Belongs to the pseudouridine synthase TruB family.
  
 
 0.638
K01D12.6
Uncharacterized protein.
   
  
 0.637
B0024.11
Putative pseudouridine synthase B0024.11.
   
 
 0.635
C50F4.12
Uncharacterized protein.
   
 
 0.629
F09E5.7
Uncharacterized protein.
   
 
 0.622
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.