Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| F13B12.1 | ZK973.1 | F13B12.1.1 | ZK973.1.1 | IWS1-like protein. | S1 motif domain-containing protein. | 0.929 |
| F13B12.1 | cdc-73 | F13B12.1.1 | F35F11.1.1 | IWS1-like protein. | Cell division cycle protein 73; Component of the PAF1 complex which is a multifunctional complex involved in transcription initiation via genetic interactions with TATA-binding proteins, elongation and transcription-coupled histone modification; Belongs to the CDC73 family. | 0.647 |
| F13B12.1 | pafo-1 | F13B12.1.1 | C55A6.9.1 | IWS1-like protein. | RNA polymerase II-associated factor 1 homolog; Component of the PAF1 complex which is a multifunctional complex involved in transcription initiation via genetic interactions with TATA-binding proteins, elongation and transcription-coupled histone modification. | 0.561 |
| F13B12.1 | rpb-4 | F13B12.1.1 | F43E2.2.1 | IWS1-like protein. | RPOL4c domain-containing protein. | 0.503 |
| F13B12.1 | rpb-5 | F13B12.1.1 | H27M09.2.1 | IWS1-like protein. | DNA-directed RNA polymerases I, II, and III subunit RPABC1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. Pol II is the central component of the basal RNA polymerase II transcription machinery. Pols are composed of mobile elements that move relative to each other. In Pol II, RPB5 is part of the lower [...] | 0.721 |
| F13B12.1 | rpb-7 | F13B12.1.1 | Y54E10BR.6.1 | IWS1-like protein. | S1 motif domain-containing protein. | 0.532 |
| F13B12.1 | rtfo-1 | F13B12.1.1 | F25B3.6.1 | IWS1-like protein. | RNA polymerase-associated protein RTF1 homolog; Component of the PAF1 complex which is a multifunctional complex involved in transcription initiation via genetic interactions with TATA-binding proteins, elongation and transcription-coupled histone modification. | 0.876 |
| F13B12.1 | spt-16 | F13B12.1.1 | F55A3.3.1 | IWS1-like protein. | FACT complex subunit spt-16; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment [...] | 0.959 |
| F13B12.1 | spt-4 | F13B12.1.1 | F54C4.2.1 | IWS1-like protein. | Transcription elongation factor SPT4; May function as a component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II. DSIF may enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex. | 0.918 |
| F13B12.1 | spt-5 | F13B12.1.1 | K08E4.1.2 | IWS1-like protein. | Transcription elongation factor SPT5; May function as a component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II. DSIF may enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex. Belongs to the SPT5 family. | 0.972 |
| ZK973.1 | F13B12.1 | ZK973.1.1 | F13B12.1.1 | S1 motif domain-containing protein. | IWS1-like protein. | 0.929 |
| ZK973.1 | cdc-73 | ZK973.1.1 | F35F11.1.1 | S1 motif domain-containing protein. | Cell division cycle protein 73; Component of the PAF1 complex which is a multifunctional complex involved in transcription initiation via genetic interactions with TATA-binding proteins, elongation and transcription-coupled histone modification; Belongs to the CDC73 family. | 0.860 |
| ZK973.1 | pafo-1 | ZK973.1.1 | C55A6.9.1 | S1 motif domain-containing protein. | RNA polymerase II-associated factor 1 homolog; Component of the PAF1 complex which is a multifunctional complex involved in transcription initiation via genetic interactions with TATA-binding proteins, elongation and transcription-coupled histone modification. | 0.857 |
| ZK973.1 | rpb-4 | ZK973.1.1 | F43E2.2.1 | S1 motif domain-containing protein. | RPOL4c domain-containing protein. | 0.880 |
| ZK973.1 | rpb-5 | ZK973.1.1 | H27M09.2.1 | S1 motif domain-containing protein. | DNA-directed RNA polymerases I, II, and III subunit RPABC1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. Pol II is the central component of the basal RNA polymerase II transcription machinery. Pols are composed of mobile elements that move relative to each other. In Pol II, RPB5 is part of the lower [...] | 0.890 |
| ZK973.1 | rpb-7 | ZK973.1.1 | Y54E10BR.6.1 | S1 motif domain-containing protein. | S1 motif domain-containing protein. | 0.889 |
| ZK973.1 | rtfo-1 | ZK973.1.1 | F25B3.6.1 | S1 motif domain-containing protein. | RNA polymerase-associated protein RTF1 homolog; Component of the PAF1 complex which is a multifunctional complex involved in transcription initiation via genetic interactions with TATA-binding proteins, elongation and transcription-coupled histone modification. | 0.864 |
| ZK973.1 | spt-16 | ZK973.1.1 | F55A3.3.1 | S1 motif domain-containing protein. | FACT complex subunit spt-16; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment [...] | 0.890 |
| ZK973.1 | spt-4 | ZK973.1.1 | F54C4.2.1 | S1 motif domain-containing protein. | Transcription elongation factor SPT4; May function as a component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II. DSIF may enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex. | 0.926 |
| ZK973.1 | spt-5 | ZK973.1.1 | K08E4.1.2 | S1 motif domain-containing protein. | Transcription elongation factor SPT5; May function as a component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II. DSIF may enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex. Belongs to the SPT5 family. | 0.925 |
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