STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW28238.1Hypothetical protein. (215 aa)    
Predicted Functional Partners:
SCW28293.1
Hypothetical protein.
 
     0.857
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.811
SCW28284.1
Uncharacterized protein YpmB.
 
     0.806
SCW46111.1
Sensor_kinase_SpoOB-type, alpha-helical domain.
  
  
  0.797
SCW69013.1
Tetratricopeptide repeat-containing protein.
 
 
 0.778
SCW28088.1
Hypothetical protein.
  
     0.773
SCW46280.1
Stage II sporulation protein B.
  
     0.769
SCW42241.1
YlzJ-like protein.
  
     0.766
SCW86337.1
Hypothetical protein.
  
     0.764
SCW54507.1
YheC/D like ATP-grasp.
  
     0.762
Your Current Organism:
Paenibacillus tianmuensis
NCBI taxonomy Id: 624147
Other names: CGMCC 1.8946, DSM 22342, P. tianmuensis, Paenibacillus sp. B27, Paenibacillus tianmuensis Wu et al., 2011, strain B27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.