STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW31361.1Ribonuclease BN, tRNA processing enzyme. (255 aa)    
Predicted Functional Partners:
SCW31369.1
Transcriptional regulator, RpiR family.
       0.801
SCW31380.1
Putative hydrolase of the HAD superfamily.
       0.801
SCW31351.1
Peptide/nickel transport system substrate-binding protein.
       0.596
SCW34218.1
ABC-type uncharacterized transport system.
   
   0.585
SCW82022.1
Hypothetical protein.
   
   0.585
SCW83449.1
Hypothetical protein.
   
   0.585
SCW59391.1
Uncharacterized integral membrane protein.
 
     0.509
SCW31399.1
Spore germination protein (amino acid permease).
 
     0.483
SCW31340.1
Peptide/nickel transport system permease protein.
       0.459
SCW31322.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.430
Your Current Organism:
Paenibacillus tianmuensis
NCBI taxonomy Id: 624147
Other names: CGMCC 1.8946, DSM 22342, P. tianmuensis, Paenibacillus sp. B27, Paenibacillus tianmuensis Wu et al., 2011, strain B27
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.