STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW68460.1DNA-binding transcriptional regulator, MarR family. (184 aa)    
Predicted Functional Partners:
SCW39255.1
PTS system, D-glucosamine-specific IIC component.
     
 0.802
SCW68443.1
Predicted arabinose efflux permease, MFS family.
 
     0.653
SCW68451.1
ATP-binding cassette, subfamily B, MsbA.
       0.590
SCW79556.1
PTS system, N-acetylglucosamine-specific IIC component.
     
 0.490
SCW68468.1
Glyoxylase, beta-lactamase superfamily II.
       0.470
SCW82577.1
DNA-binding transcriptional regulator, MarR family.
  
     0.469
SCW68475.1
Hypothetical protein.
   
 
 0.439
Your Current Organism:
Paenibacillus tianmuensis
NCBI taxonomy Id: 624147
Other names: CGMCC 1.8946, DSM 22342, P. tianmuensis, Paenibacillus sp. B27, Paenibacillus tianmuensis Wu et al., 2011, strain B27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.