A0A0K0E8U2 protein (Strongyloides stercoralis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0K0E8U2

OB domain-containing protein. (142 aa)

Predicted Functional Partners:

A0A0K0E8K3

0.983

A0A0K0DXI2

0.905

A0A0K0E0S5

0.905

A0A0K0EM04

0.905

A0A0K0DUD4

0.895

A0A0K0ENW0

0.843

A0A0K0DTD8

0.841

A0A0K0E023

0.833

A0A0K0EL86

0.830

A0A0K0DSC7

0.769

Your Current Organism:

Strongyloides stercoralis

NCBI taxonomy Id: 6248
Other names: S. stercoralis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0K0DSC7	A0A0K0DTD8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Beta-Casp domain-containing protein.	0.957
A0A0K0DSC7	A0A0K0DUD4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.893
A0A0K0DSC7	A0A0K0DXI2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	MFS domain-containing protein.	0.937
A0A0K0DSC7	A0A0K0E023	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.959
A0A0K0DSC7	A0A0K0E0S5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	MFS domain-containing protein.	0.937
A0A0K0DSC7	A0A0K0E8K3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.988
A0A0K0DSC7	A0A0K0E8U2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	OB domain-containing protein.	0.769
A0A0K0DSC7	A0A0K0EL86	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	MFS domain-containing protein.	0.913
A0A0K0DSC7	A0A0K0EM04	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	INTS5_C domain-containing protein.	0.937
A0A0K0DSC7	A0A0K0ENW0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	MFS domain-containing protein.	0.921
A0A0K0DTD8	A0A0K0DSC7	Beta-Casp domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.957
A0A0K0DTD8	A0A0K0DUD4	Beta-Casp domain-containing protein.	Uncharacterized protein.	0.964
A0A0K0DTD8	A0A0K0DXI2	Beta-Casp domain-containing protein.	MFS domain-containing protein.	0.967
A0A0K0DTD8	A0A0K0E023	Beta-Casp domain-containing protein.	Uncharacterized protein.	0.998
A0A0K0DTD8	A0A0K0E0S5	Beta-Casp domain-containing protein.	MFS domain-containing protein.	0.967
A0A0K0DTD8	A0A0K0E8K3	Beta-Casp domain-containing protein.	Uncharacterized protein.	0.995
A0A0K0DTD8	A0A0K0E8U2	Beta-Casp domain-containing protein.	OB domain-containing protein.	0.841
A0A0K0DTD8	A0A0K0EL86	Beta-Casp domain-containing protein.	MFS domain-containing protein.	0.946
A0A0K0DTD8	A0A0K0EM04	Beta-Casp domain-containing protein.	INTS5_C domain-containing protein.	0.975
A0A0K0DTD8	A0A0K0ENW0	Beta-Casp domain-containing protein.	MFS domain-containing protein.	0.955