A0A0K0EJB5 protein (Strongyloides stercoralis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0K0EJB5

Uncharacterized protein. (372 aa)

Predicted Functional Partners:

A0A0K0EID0

0.940

A0A0K0EI73

0.930

A0A0K0EES6

0.927

A0A0K0EIB7

0.832

A0A0K0E2N8

0.831

A0A0K0DVP6

0.823

A0A0K0DUP8

0.794

A0A0K0EN11

0.777

A0A0K0E0Y3

0.752

A0A0K0DX31

0.751

Your Current Organism:

Strongyloides stercoralis

NCBI taxonomy Id: 6248
Other names: S. stercoralis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0K0DUP8	A0A0K0DVP6	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A0K0DUP8	A0A0K0DX31	Uncharacterized protein.	Uncharacterized protein.	0.793
A0A0K0DUP8	A0A0K0E2N8	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.604
A0A0K0DUP8	A0A0K0EES6	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.872
A0A0K0DUP8	A0A0K0EI73	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.939
A0A0K0DUP8	A0A0K0EIB7	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.488
A0A0K0DUP8	A0A0K0EID0	Uncharacterized protein.	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.841
A0A0K0DUP8	A0A0K0EJB5	Uncharacterized protein.	Uncharacterized protein.	0.794
A0A0K0DUP8	A0A0K0EN11	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.995
A0A0K0DVP6	A0A0K0DUP8	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A0K0DVP6	A0A0K0DX31	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A0K0DVP6	A0A0K0E0Y3	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A0K0DVP6	A0A0K0E2N8	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.996
A0A0K0DVP6	A0A0K0EES6	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.976
A0A0K0DVP6	A0A0K0EI73	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.990
A0A0K0DVP6	A0A0K0EIB7	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.991
A0A0K0DVP6	A0A0K0EID0	Uncharacterized protein.	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.952
A0A0K0DVP6	A0A0K0EJB5	Uncharacterized protein.	Uncharacterized protein.	0.823
A0A0K0DVP6	A0A0K0EN11	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.828
A0A0K0DX31	A0A0K0DUP8	Uncharacterized protein.	Uncharacterized protein.	0.793