A0A0K0ELI1 protein (Strongyloides stercoralis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0K0ELI1

Uncharacterized protein. (218 aa)

Predicted Functional Partners:

A0A0K0EGB8

0.977

A0A0K0EB27

0.976

A0A0K0DYH4

0.971

A0A0K0E5A8

0.971

A0A0K0E8K1

0.962

A0A0K0EEB9

0.953

A0A0K0DVG1

0.935

A0A0K0EDJ2

0.918

A0A0K0EHW6

0.918

A0A0K0EN11

0.912

Your Current Organism:

Strongyloides stercoralis

NCBI taxonomy Id: 6248
Other names: S. stercoralis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0K0DVG1	A0A0K0E8K1	Vps53_N domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.840
A0A0K0DVG1	A0A0K0EDJ2	Vps53_N domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.518
A0A0K0DVG1	A0A0K0EEB9	Vps53_N domain-containing protein.	CNH domain-containing protein.	0.401
A0A0K0DVG1	A0A0K0EGB8	Vps53_N domain-containing protein.	RIC1 domain-containing protein.	0.733
A0A0K0DVG1	A0A0K0EHW6	Vps53_N domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.514
A0A0K0DVG1	A0A0K0ELI1	Vps53_N domain-containing protein.	Uncharacterized protein.	0.935
A0A0K0DVG1	A0A0K0EN11	Vps53_N domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.900
A0A0K0DYH4	A0A0K0E8K1	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.674
A0A0K0DYH4	A0A0K0EGB8	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RIC1 domain-containing protein.	0.692
A0A0K0DYH4	A0A0K0ELI1	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.971
A0A0K0E5A8	A0A0K0E8K1	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.674
A0A0K0E5A8	A0A0K0EGB8	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RIC1 domain-containing protein.	0.692
A0A0K0E5A8	A0A0K0ELI1	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.971
A0A0K0E8K1	A0A0K0DVG1	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Vps53_N domain-containing protein.	0.840
A0A0K0E8K1	A0A0K0DYH4	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.674
A0A0K0E8K1	A0A0K0E5A8	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.674
A0A0K0E8K1	A0A0K0EEB9	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	CNH domain-containing protein.	0.441
A0A0K0E8K1	A0A0K0EGB8	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	RIC1 domain-containing protein.	0.824
A0A0K0E8K1	A0A0K0ELI1	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.962
A0A0K0E8K1	A0A0K0EN11	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.882