STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kdm1aLysine-specific histone demethylase 1A. (280 aa)    
Predicted Functional Partners:
rcor1
REST corepressor 1.
   
 0.935
spr-1-2
REST corepressor spr-1.
   
 0.935
CoRest
REST corepressor.
   
 0.934
Kdm1a-2
Lysine-specific histone demethylase 1A.
 
     0.897
rbbp7
Histone-binding protein RBBP7.
   
 0.891
HMG20A
High mobility group protein 20A.
   
 0.882
NDUFAF6
NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6.
  
 
 0.868
hdac3
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.837
hda-1
Histone deacetylase 1.
   
 0.837
Rpd3
Histone deacetylase Rpd3.
   
 0.837
Your Current Organism:
Toxocara canis
NCBI taxonomy Id: 6265
Other names: T. canis, dog roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.