Tcan_02190 protein (Toxocara canis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Tcan_02190

Uncharacterized protein. (203 aa)

Predicted Functional Partners:

Nup62

0.994

Ranbp2

0.888

NUP205

0.852

Nup107

0.840

Nup107-2

0.840

nxf-1

0.839

nxf-1-2

0.839

npp-15

0.828

NUP214

0.825

npp-17

0.823

Your Current Organism:

Toxocara canis

NCBI taxonomy Id: 6265
Other names: T. canis, dog roundworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NUP205	NUP214	A0A0B2VGY4	A0A0B2UZ00	Nuclear pore complex protein.	Nuclear pore complex protein.	0.995
NUP205	Nup107	A0A0B2VGY4	A0A0B2V804	Nuclear pore complex protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.991
NUP205	Nup107-2	A0A0B2VGY4	A0A0B2VDT4	Nuclear pore complex protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.991
NUP205	Nup62	A0A0B2VGY4	A0A0B2VTK8	Nuclear pore complex protein.	Nuclear pore glycoprotein p62.	0.999
NUP205	Ranbp2	A0A0B2VGY4	A0A0B2UNS4	Nuclear pore complex protein.	E3 SUMO-protein ligase RanBP2.	0.988
NUP205	Tcan_02190	A0A0B2VGY4	A0A0B2UQ70	Nuclear pore complex protein.	Uncharacterized protein.	0.852
NUP205	npp-15	A0A0B2VGY4	A0A0B2V2H9	Nuclear pore complex protein.	Nuclear pore complex protein 15.	0.996
NUP205	npp-17	A0A0B2VGY4	A0A0B2UZF7	Nuclear pore complex protein.	Nucleoporin-17.	0.923
NUP205	nxf-1	A0A0B2VGY4	A0A0B2VK97	Nuclear pore complex protein.	Nuclear RNA export factor 1.	0.831
NUP205	nxf-1-2	A0A0B2VGY4	A0A0B2VLV8	Nuclear pore complex protein.	Nuclear RNA export factor 1.	0.825
NUP214	NUP205	A0A0B2UZ00	A0A0B2VGY4	Nuclear pore complex protein.	Nuclear pore complex protein.	0.995
NUP214	Nup107	A0A0B2UZ00	A0A0B2V804	Nuclear pore complex protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.987
NUP214	Nup107-2	A0A0B2UZ00	A0A0B2VDT4	Nuclear pore complex protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.987
NUP214	Nup62	A0A0B2UZ00	A0A0B2VTK8	Nuclear pore complex protein.	Nuclear pore glycoprotein p62.	0.999
NUP214	Ranbp2	A0A0B2UZ00	A0A0B2UNS4	Nuclear pore complex protein.	E3 SUMO-protein ligase RanBP2.	0.991
NUP214	Tcan_02190	A0A0B2UZ00	A0A0B2UQ70	Nuclear pore complex protein.	Uncharacterized protein.	0.825
NUP214	npp-15	A0A0B2UZ00	A0A0B2V2H9	Nuclear pore complex protein.	Nuclear pore complex protein 15.	0.996
NUP214	npp-17	A0A0B2UZ00	A0A0B2UZF7	Nuclear pore complex protein.	Nucleoporin-17.	0.991
NUP214	nxf-1	A0A0B2UZ00	A0A0B2VK97	Nuclear pore complex protein.	Nuclear RNA export factor 1.	0.991
NUP214	nxf-1-2	A0A0B2UZ00	A0A0B2VLV8	Nuclear pore complex protein.	Nuclear RNA export factor 1.	0.971