STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmn-1Lamin-1; Belongs to the intermediate filament family. (513 aa)    
Predicted Functional Partners:
ced-3
Cell death protein 3; Belongs to the peptidase C14A family.
   
 0.765
LEMD3
Inner nuclear membrane protein Man1.
    
 0.679
unc-84
Nuclear migration and anchoring protein unc-84.
    
 0.675
ARHGAP39
Rho GTPase-activating protein 39.
    
 0.648
RBM39
RNA-binding protein 39.
   
 0.606
Rbm39
RNA-binding protein 39.
   
 0.606
ulp-1
Sentrin-specific protease.
    
 0.594
emr-1
Emerin-like protein 1.
    
 
 0.575
unc-89-2
Muscle M-line assembly protein unc-89.
  
 
 0.561
Tcan_02609
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
     
 0.537
Your Current Organism:
Toxocara canis
NCBI taxonomy Id: 6265
Other names: T. canis, dog roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.