STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBFAPutative ribosome-binding factor A, mitochondrial. (310 aa)    
Predicted Functional Partners:
Mrps21
28S ribosomal protein S21, mitochondrial.
   
   0.932
mrps-7
28S ribosomal protein S7, mitochondrial.
    
   0.921
MRPS11
28S ribosomal protein S11, mitochondrial.
    
   0.921
mrps-15
28S ribosomal protein S15, mitochondrial.
    
 
 0.857
mrps-23
Putative 28S ribosomal protein S23, mitochondrial.
   
   0.855
tag-242
Deoxyhypusine hydroxylase; Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L- lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor; Belongs to the deoxyhypusine hydroxylase family.
    
 
 0.855
Tcan_15083
Uncharacterized protein.
   
   0.851
MRPS18C
28S ribosomal protein S18c, mitochondrial.
   
   0.851
MRPS22
28S ribosomal protein S22, mitochondrial.
    
 
 0.846
mRpS26
Putative 28S ribosomal protein S26, mitochondrial.
   
   0.846
Your Current Organism:
Toxocara canis
NCBI taxonomy Id: 6265
Other names: T. canis, dog roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.